PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_30102.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 57aa    MW: 6826.05 Da    PI: 10.1717
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_30102.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.54.3e-128481155
                  HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                   RR +i +++ +L+el+P+      k  + +++L +Av+YIk+Lq
  MLOC_30102.4  8 VRRTKISERIRKLQELVPNM----EKQTNTSDMLDLAVDYIKELQ 48
                  6******************6....4679****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.176147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-7353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.55E-14753IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-9848IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.83E-7952No hitNo description
Gene3DG3DSA:4.10.280.104.6E-151052IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 57 aa     Download sequence    Send to blast
RGVRCTQVRR TKISERIRKL QELVPNMEKQ TNTSDMLDLA VDYIKELQMQ VKVCIYR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3715047e-71AK371504.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2135O23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238294.14e-24PREDICTED: transcription factor bHLH130-like
SwissprotQ66GR31e-21BH130_ARATH; Transcription factor bHLH130
TrEMBLM0VIH61e-34M0VIH6_HORVD; Uncharacterized protein
STRINGBRADI4G33670.11e-23(Brachypodium distachyon)
STRINGMLOC_30102.22e-24(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.17e-23bHLH family protein